EnhancerDB
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  3. rs535542859[chr19:2612509]
Enhancers that have rs535542859[chr19:2612509]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 2605719 2641695 enh4960
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs535542859[chr19:2612509]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 2612503 2612517 GLIS2 JASPAR yes 112083010
chr19 2612504 2612514 SP1 JASPAR yes 112083011
chr19 2612504 2612514 ZNF740 JASPAR yes 112083012
chr19 2612504 2612519 TFAP2C JASPAR yes 112083013
chr19 2612505 2612515 ZNF740 JASPAR yes 112083014
chr19 2612505 2612518 TFAP2A JASPAR yes 112083015
chr19 2612505 2612518 TFAP2B JASPAR yes 112083016
chr19 2612505 2612518 TFAP2C JASPAR yes 112083017
chr19 2612506 2612518 TFAP2A JASPAR yes 112083018
chr19 2612506 2612518 TFAP2B JASPAR yes 112083019
chr19 2612506 2612518 TFAP2C JASPAR yes 112083020
chr19 2612507 2612518 TFAP2A JASPAR yes 112083021
chr19 2612507 2612518 TFAP2B JASPAR yes 112083022
chr19 2612507 2612518 TFAP2C JASPAR yes 112083023
chr19 2612508 2612517 TFAP2A JASPAR yes 112083024
Genes associated with rs535542859[chr19:2612509], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More