EnhancerDB
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  3. rs537890869[chr1:39612666]
Enhancers that have rs537890869[chr1:39612666]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs537890869[chr1:39612666]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39612664 39612679 FOXA1 JASPAR yes 28258109
chr1 39612665 39612671 LEF1 TRANSFAC yes 28258110
chr1 39612665 39612671 SOX10 JASPAR yes 28258111
chr1 39612665 39612677 FOXI1 JASPAR yes 28258112
chr1 39612665 39612680 FOXP1 JASPAR yes 28258113
chr1 39612666 39612677 FOXP2 JASPAR yes 28258114
chr1 39612666 39612678 FOXC2 JASPAR yes 28258115
chr1 39612666 39612680 FOXF2 JASPAR yes 28258116
Genes associated with rs537890869[chr1:39612666], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More