EnhancerDB
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  3. rs538844029[chr19:4372953]
Enhancers that have rs538844029[chr19:4372953]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 4365204 4379535 enh4970
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs538844029[chr19:4372953]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 4372618 4375651 TCF7L2 GTRD no Colon (HCT116) 21840936
chr19 4372618 4375651 TCF7L2 GTRD no Colon (HCT116) 108371001
chr19 4372618 4375651 TCF7L2 GTRD no Colon (HCT116) 108371002
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 21840937
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 108371003
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 108371004
chr19 4372944 4378227 TCF7L2 GTRD no Colon (HCT116) 108371005
chr19 4372948 4372960 TFAP2A JASPAR yes 112169458
Genes associated with rs538844029[chr19:4372953], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More