EnhancerDB
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  3. rs539022260[chr16:88849645]
Enhancers that have rs539022260[chr16:88849645]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88819352 88850435 enh16903
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539022260[chr16:88849645]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88849639 88849648 HIC2 JASPAR yes 12304075
chr16 88849640 88849653 TFAP2A JASPAR yes 12304076
chr16 88849640 88849653 TFAP2B JASPAR yes 12304077
chr16 88849640 88849653 TFAP2C JASPAR yes 12304078
chr16 88849640 88849655 TFAP2C JASPAR yes 12304079
chr16 88849641 88849652 EBF1 JASPAR yes 12304080
Genes associated with rs539022260[chr16:88849645], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More