EnhancerDB
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  3. rs539074566[chr1:39664328]
Enhancers that have rs539074566[chr1:39664328]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39647111 39665522 enh11761
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539074566[chr1:39664328]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39664325 39664340 FOXP1 JASPAR yes 28266329
chr1 39664326 39664341 FOXP1 JASPAR yes 28266330
chr1 39664327 39664342 FOXP1 JASPAR yes 28266331
chr1 39664327 39664348 IRF1 JASPAR yes 28266332
chr1 39664328 39664343 FOXP1 JASPAR yes 28266333
chr1 39664328 39664349 IRF1 JASPAR yes 28266334
Genes associated with rs539074566[chr1:39664328], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More