EnhancerDB
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  3. rs539215520[chr2:37892449]
Enhancers that have rs539215520[chr2:37892449]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 37873616 37895683 enh5417
Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Heart
chr2 37892431 37892964 vista31043
VISTA
Transcript factors that have rs539215520[chr2:37892449]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 37892436 37892456 RREB1 JASPAR yes 22034725
chr2 37892436 37892456 RREB1 JASPAR yes 73072885
chr2 37892448 37892463 SOX21 JASPAR yes 22034726
chr2 37892448 37892463 SOX21 JASPAR yes 73072886
chr2 37892448 37892464 SOX4 JASPAR yes 22034727
chr2 37892448 37892464 SOX4 JASPAR yes 73072887
Genes associated with rs539215520[chr2:37892449], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More