EnhancerDB
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  3. rs539227892[chr2:232542312]
Enhancers that have rs539227892[chr2:232542312]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 232518645 232563095 enh6202
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539227892[chr2:232542312]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 232542301 232542312 USF2 JASPAR yes 81735341
chr2 232542302 232542313 USF1 JASPAR yes 81735342
chr2 232542309 232542319 POU6F2 JASPAR yes 81735344
chr2 232542310 232542320 ALX3 JASPAR yes 81735345
chr2 232542310 232542320 EMX2 JASPAR yes 81735346
chr2 232542310 232542320 ESX1 JASPAR yes 81735347
chr2 232542310 232542320 GBX2 JASPAR yes 81735348
chr2 232542310 232542320 GSX1 JASPAR yes 81735349
chr2 232542310 232542320 GSX2 JASPAR yes 81735350
chr2 232542310 232542320 HESX1 JASPAR yes 81735351
chr2 232542310 232542320 HOXB2 JASPAR yes 81735352
chr2 232542310 232542320 HOXB3 JASPAR yes 81735353
chr2 232542310 232542320 LBX2 JASPAR yes 81735354
chr2 232542310 232542320 LHX2 JASPAR yes 81735355
chr2 232542310 232542320 LHX6 JASPAR yes 81735356
chr2 232542310 232542320 MEOX1 JASPAR yes 81735357
chr2 232542310 232542320 MEOX2 JASPAR yes 81735358
chr2 232542310 232542320 MIXL1 JASPAR yes 81735359
chr2 232542310 232542320 MNX1 JASPAR yes 81735360
chr2 232542310 232542320 NOTO JASPAR yes 81735361
chr2 232542310 232542320 POU6F1 JASPAR yes 81735362
chr2 232542310 232542320 RAX JASPAR yes 81735363
chr2 232542310 232542321 HOXA10 JASPAR yes 81735364
chr2 232542311 232542319 BSX JASPAR yes 81735365
chr2 232542311 232542319 DLX6 JASPAR yes 81735366
chr2 232542311 232542319 EN1 JASPAR yes 81735367
chr2 232542311 232542319 ISX JASPAR yes 81735368
chr2 232542311 232542319 LBX1 JASPAR yes 81735369
chr2 232542311 232542319 LHX9 JASPAR yes 81735370
chr2 232542311 232542319 LMX1A JASPAR yes 81735371
chr2 232542311 232542319 LMX1B JASPAR yes 81735372
chr2 232542311 232542319 NKX6-1 JASPAR yes 81735373
chr2 232542311 232542319 NKX6-2 JASPAR yes 81735374
chr2 232542311 232542319 PAX4 JASPAR yes 81735375
chr2 232542311 232542319 PDX1 JASPAR yes 81735376
chr2 232542311 232542319 PRRX1 JASPAR yes 81735377
chr2 232542311 232542319 RAX2 JASPAR yes 81735378
chr2 232542311 232542319 SHOX JASPAR yes 81735379
chr2 232542311 232542319 UNCX JASPAR yes 81735380
chr2 232542311 232542319 VAX1 JASPAR yes 81735381
chr2 232542311 232542319 VAX2 JASPAR yes 81735382
chr2 232542311 232542319 VSX1 JASPAR yes 81735383
chr2 232542311 232542319 VSX2 JASPAR yes 81735384
chr2 232542311 232542321 HOXB13 JASPAR yes 81735385
chr2 232542311 232542321 HOXD13 JASPAR yes 81735386
Genes associated with rs539227892[chr2:232542312], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More