EnhancerDB
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  3. rs539254139[chr17:25684676]
Enhancers that have rs539254139[chr17:25684676]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25656275 25685575 enh4305
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539254139[chr17:25684676]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25684669 25684678 NKX3-2 JASPAR yes 53624211
chr17 25684670 25684678 ISL2 JASPAR yes 53624212
chr17 25684675 25684696 ZNF263 JASPAR yes 53624213
Genes associated with rs539254139[chr17:25684676], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More