EnhancerDB
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  3. rs539257488[chr16:25002102]
Enhancers that have rs539257488[chr16:25002102]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 24992965 25014102 enh3954
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539257488[chr16:25002102]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 25002086 25002107 IRF1 JASPAR yes 10092961
chr16 25002088 25002103 STAT2 JASPAR yes 10092962
chr16 25002088 25002109 IRF1 JASPAR yes 10092963
chr16 25002091 25002106 FOXP1 JASPAR yes 10092964
chr16 25002092 25002107 FOXP1 JASPAR yes 10092965
chr16 25002093 25002108 FOXP1 JASPAR yes 10092966
chr16 25002093 25002114 IRF1 JASPAR yes 10092967
chr16 25002094 25002109 FOXP1 JASPAR yes 10092968
chr16 25002095 25002110 FOXP1 JASPAR yes 10092969
chr16 25002096 25002111 FOXP1 JASPAR yes 10092970
chr16 25002098 25002113 MEF2A JASPAR yes 10092971
chr16 25002099 25002114 MEF2C JASPAR yes 10092972
Genes associated with rs539257488[chr16:25002102], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More