EnhancerDB
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  3. rs539374147[chr17:25662754]
Enhancers that have rs539374147[chr17:25662754]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25656275 25685575 enh4305
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539374147[chr17:25662754]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25662736 25662757 IRF1 JASPAR yes 53621002
chr17 25662742 25662763 IRF1 JASPAR yes 53621003
chr17 25662746 25662767 IRF1 JASPAR yes 53621004
chr17 25662747 25662768 IRF1 JASPAR yes 53621005
chr17 25662748 25662769 IRF1 JASPAR yes 53621006
chr17 25662749 25662764 FOXP1 JASPAR yes 53621007
chr17 25662749 25662770 IRF1 JASPAR yes 53621008
chr17 25662750 25662771 IRF1 JASPAR yes 53621009
chr17 25662751 25662766 FOXP1 JASPAR yes 53621010
chr17 25662752 25662767 FOXP1 JASPAR yes 53621011
chr17 25662753 25662768 FOXP1 JASPAR yes 53621012
chr17 25662754 25662769 FOXP1 JASPAR yes 53621013
Genes associated with rs539374147[chr17:25662754], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More