EnhancerDB
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  3. rs539390045[chr12:125252169]
Enhancers that have rs539390045[chr12:125252169]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539390045[chr12:125252169]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125251720 125252296 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 21582977
chr12 125251879 125252279 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582980
chr12 125252161 125252173 TFAP2A JASPAR yes 124419765
chr12 125252161 125252173 TFAP2B JASPAR yes 124419766
chr12 125252161 125252173 TFAP2C JASPAR yes 124419767
chr12 125252161 125252176 TFAP2A JASPAR yes 124419768
chr12 125252161 125252176 TFAP2C JASPAR yes 124419769
chr12 125252162 125252171 TFAP2A JASPAR yes 124419770
chr12 125252162 125252173 EBF1 JASPAR yes 124419771
chr12 125252167 125252177 SP1 JASPAR yes 124419772
Genes associated with rs539390045[chr12:125252169], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More