EnhancerDB
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  3. rs539450999[chr1:1797323]
Enhancers that have rs539450999[chr1:1797323]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 1770710 1799155 enh6
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539450999[chr1:1797323]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 1797306 1797327 IRF1 JASPAR yes 26208936
chr1 1797312 1797327 FOXP1 JASPAR yes 26208937
chr1 1797313 1797324 FOXA1 JASPAR yes 26208938
chr1 1797315 1797326 FOXP2 JASPAR yes 26208939
chr1 1797319 1797340 IRF1 JASPAR yes 26208940
chr1 1797321 1797336 STAT2 JASPAR yes 26208941
chr1 1797321 1797341 RREB1 JASPAR yes 26208942
chr1 1797322 1797336 STAT1 JASPAR yes 26208943
chr1 1797323 1797335 IRF1 JASPAR yes 26208944
chr1 1797323 1797337 IRF7 JASPAR yes 26208945
Genes associated with rs539450999[chr1:1797323], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More