EnhancerDB
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  3. rs539453582[chr17:80498170]
Enhancers that have rs539453582[chr17:80498170]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80480565 80515355 enh4649
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539453582[chr17:80498170]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80498154 80498175 IRF1 JASPAR yes 56372273
chr17 80498155 80498170 FOXP1 JASPAR yes 56372274
chr17 80498156 80498177 IRF1 JASPAR yes 56372275
chr17 80498157 80498172 FOXP1 JASPAR yes 56372276
Genes associated with rs539453582[chr17:80498170], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More