EnhancerDB
  1. Home
  2. SNP
  3. rs539454034[chr12:116958868]
Enhancers that have rs539454034[chr12:116958868]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 116953469 116985255 enh30011
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr12 116958826 116959052 vista15036
VISTA
Transcript factors that have rs539454034[chr12:116958868]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 116958137 116958877 ZNF143 GTRD no Epithelial (MCF-7) 21577178
chr12 116958137 116958877 ZNF143 GTRD no Epithelial (MCF-7) 108061731
chr12 116958182 116959091 ZNF143 GTRD no Epithelial (MCF-7) 21577179
chr12 116958182 116959091 ZNF143 GTRD no Epithelial (MCF-7) 108061732
chr12 116958206 116959013 ZNF143 GTRD no Epithelial (MCF-7) 21577180
chr12 116958206 116959013 ZNF143 GTRD no Epithelial (MCF-7) 108061733
chr12 116958357 116958909 ZBTB33 GTRD no Lung (A549) 108061735
chr12 116958445 116958886 ZBTB33 GTRD no Lung (A549) 108061737
chr12 116958732 116959108 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21577184
chr12 116958732 116959108 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108061740
chr12 116958863 116958878 MEF2C JASPAR yes 82483961
chr12 116958863 116958878 MEF2C JASPAR yes 124005796
chr12 116958864 116958879 MEF2A JASPAR yes 82483962
chr12 116958864 116958879 MEF2A JASPAR yes 124005797
chr12 116958866 116958881 FOXP1 JASPAR yes 82483963
chr12 116958866 116958881 FOXP1 JASPAR yes 124005798
chr12 116958867 116958873 TBP TRANSFAC yes 82483964
chr12 116958867 116958873 TBP TRANSFAC yes 124005799
chr12 116958867 116958882 FOXP1 JASPAR yes 82483965
chr12 116958867 116958882 FOXP1 JASPAR yes 124005800
chr12 116958867 116958888 IRF1 JASPAR yes 82483966
chr12 116958867 116958888 IRF1 JASPAR yes 124005801
chr12 116958868 116958883 FOXP1 JASPAR yes 82483967
chr12 116958868 116958883 FOXP1 JASPAR yes 124005802
Genes associated with rs539454034[chr12:116958868], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More