EnhancerDB
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  3. rs539468921[chr5:77802544]
Enhancers that have rs539468921[chr5:77802544]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 77784972 77817655 enh8511
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Heart
chr5 77802337 77802767 vista48137
VISTA
Transcript factors that have rs539468921[chr5:77802544]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 77802535 77802545 HOXA13 JASPAR yes 63593988
chr5 77802535 77802545 HOXC10 JASPAR yes 63593989
chr5 77802535 77802545 HOXD11 JASPAR yes 63593990
chr5 77802535 77802545 HOXA13 JASPAR yes 70668122
chr5 77802535 77802545 HOXC10 JASPAR yes 70668123
chr5 77802535 77802545 HOXD11 JASPAR yes 70668124
chr5 77802535 77802546 HOXA10 JASPAR yes 63593991
chr5 77802535 77802546 HOXC11 JASPAR yes 63593992
chr5 77802535 77802546 HOXC12 JASPAR yes 63593993
chr5 77802535 77802546 HOXD12 JASPAR yes 63593994
chr5 77802535 77802546 HOXA10 JASPAR yes 70668125
chr5 77802535 77802546 HOXC11 JASPAR yes 70668126
chr5 77802535 77802546 HOXC12 JASPAR yes 70668127
chr5 77802535 77802546 HOXD12 JASPAR yes 70668128
chr5 77802536 77802545 CDX1 JASPAR yes 63593995
chr5 77802536 77802545 CDX1 JASPAR yes 70668129
chr5 77802536 77802547 CDX2 JASPAR yes 63593996
chr5 77802536 77802547 CDX2 JASPAR yes 70668130
Genes associated with rs539468921[chr5:77802544], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More