EnhancerDB
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  3. rs539488660[chr1:32421540]
Enhancers that have rs539488660[chr1:32421540]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 32415585 32431955 enh11723
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539488660[chr1:32421540]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 32421416 32422012 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 107802752
chr1 32421535 32421550 MEF2C JASPAR yes 27967992
chr1 32421536 32421547 HOXC13 JASPAR yes 27967993
chr1 32421536 32421551 MEF2A JASPAR yes 27967994
chr1 32421537 32421547 HOXC10 JASPAR yes 27967995
chr1 32421537 32421553 POU4F3 JASPAR yes 27967996
chr1 32421539 32421553 FOXF2 JASPAR yes 27967997
chr1 32421539 32421553 ONECUT3 JASPAR yes 27967998
chr1 32421539 32421553 POU4F1 JASPAR yes 27967999
chr1 32421539 32421554 FOXP1 JASPAR yes 27968000
chr1 32421539 32421554 HNF1A JASPAR yes 27968001
chr1 32421540 32421554 POU4F1 JASPAR yes 27968002
chr1 32421540 32421555 FOXA1 JASPAR yes 27968003
chr1 32421540 32421556 POU4F2 JASPAR yes 27968004
chr1 32421540 32421556 POU4F3 JASPAR yes 27968005
Genes associated with rs539488660[chr1:32421540], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More