EnhancerDB
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  3. rs539553900[chr12:125258705]
Enhancers that have rs539553900[chr12:125258705]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 125258641 125259012 vista15339
VISTA
Transcript factors that have rs539553900[chr12:125258705]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125258386 125258786 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583049
chr12 125258386 125258786 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069917
chr12 125258390 125259842 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583050
chr12 125258390 125259842 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069918
chr12 125258390 125259842 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069919
chr12 125258409 125258909 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583051
chr12 125258409 125258909 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069920
chr12 125258452 125258832 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583052
chr12 125258452 125258832 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069921
chr12 125258548 125258888 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583053
chr12 125258548 125258888 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069922
chr12 125258559 125258923 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583054
chr12 125258559 125258923 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069923
chr12 125258596 125258976 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583055
chr12 125258596 125258976 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069924
chr12 125258598 125259034 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583056
chr12 125258598 125259034 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069925
chr12 125258657 125259037 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583057
chr12 125258657 125259037 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069926
chr12 125258657 125259690 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21583058
chr12 125258657 125259690 RUNX3 UCSC Txn Factor no Conserved 108069927
chr12 125258657 125259690 RUNX3 UCSC Txn Factor no Conserved 108069928
chr12 125258657 125259690 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069929
chr12 125258657 125259690 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108069930
chr12 125258696 125258716 TP53 JASPAR yes 82498192
chr12 125258696 125258716 TP53 JASPAR yes 124420673
chr12 125258704 125258708 LFA1 TRANSFAC yes 82498193
chr12 125258704 125258708 LFA1 TRANSFAC yes 124420674
Genes associated with rs539553900[chr12:125258705], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More