EnhancerDB
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  3. rs539580470[chr17:2753671]
Enhancers that have rs539580470[chr17:2753671]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2744850 2808324 enh4213
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Neural Stem Cells (H9) Prostate (PC-3) Large Intestine Esophagus Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs539580470[chr17:2753671]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2753662 2753673 PROP1 JASPAR yes 52777145
chr17 2753670 2753682 FOXI1 JASPAR yes 52777146
chr17 2753671 2753683 FOXC2 JASPAR yes 52777147
Genes associated with rs539580470[chr17:2753671], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More