EnhancerDB
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  3. rs539585597[chr1:39622656]
Enhancers that have rs539585597[chr1:39622656]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39588469 39628695 enh11759
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539585597[chr1:39622656]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39622637 39622658 IRF1 JASPAR yes 28259833
chr1 39622638 39622659 IRF1 JASPAR yes 28259835
chr1 39622638 39622659 ZNF263 JASPAR yes 28259836
chr1 39622639 39622660 IRF1 JASPAR yes 28259838
chr1 39622641 39622656 FOXP1 JASPAR yes 28259840
chr1 39622645 39622660 FOXP1 JASPAR yes 28259841
chr1 39622652 39622659 SPIB JASPAR yes 28259842
Genes associated with rs539585597[chr1:39622656], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More