EnhancerDB
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  3. rs539608219[chr2:227519954]
Enhancers that have rs539608219[chr2:227519954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 227505953 227529050 enh19283
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539608219[chr2:227519954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 227519946 227519955 SNAI2 JASPAR yes 81479339
chr2 227519946 227519956 ID4 JASPAR yes 81479340
chr2 227519946 227519956 TCF3 JASPAR yes 81479341
chr2 227519946 227519956 TCF4 JASPAR yes 81479342
chr2 227519952 227519962 ALX3 JASPAR yes 81479343
chr2 227519952 227519962 EMX1 JASPAR yes 81479344
chr2 227519952 227519962 HOXB2 JASPAR yes 81479345
chr2 227519952 227519962 HOXB3 JASPAR yes 81479346
chr2 227519952 227519962 MEOX2 JASPAR yes 81479347
chr2 227519952 227519962 MNX1 JASPAR yes 81479348
chr2 227519953 227519961 LMX1A JASPAR yes 81479349
chr2 227519953 227519961 LMX1B JASPAR yes 81479350
chr2 227519953 227519961 NKX6-1 JASPAR yes 81479351
chr2 227519953 227519961 NKX6-2 JASPAR yes 81479352
chr2 227519953 227519961 PDX1 JASPAR yes 81479353
chr2 227519953 227519961 VAX1 JASPAR yes 81479354
chr2 227519953 227519961 VAX2 JASPAR yes 81479355
chr2 227519953 227519961 VSX1 JASPAR yes 81479356
chr2 227519954 227519965 PHOX2A JASPAR yes 81479357
chr2 227519954 227519965 PROP1 JASPAR yes 81479358
Genes associated with rs539608219[chr2:227519954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More