EnhancerDB
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  3. rs539646909[chr17:59398646]
Enhancers that have rs539646909[chr17:59398646]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 59383635 59420035 enh17269
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Kidney Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
chr17 59398606 59399069 vista25404
VISTA
Transcript factors that have rs539646909[chr17:59398646]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 21777324
chr17 59396443 59400405 ZNF143 GTRD no Epithelial (MCF-7) 108279396
chr17 59398310 59398775 ZNF274 GTRD no Bone Marrow (K562) 108279397
chr17 59398344 59398747 ZNF274 GTRD no Bone Marrow (K562) 108279398
chr17 59398634 59398652 SRF JASPAR yes 21268508
chr17 59398634 59398652 SRF JASPAR yes 55148027
Genes associated with rs539646909[chr17:59398646], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More