EnhancerDB
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  3. rs539654805[chr16:4341404]
Enhancers that have rs539654805[chr16:4341404]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 4330820 4352135 enh16514
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539654805[chr16:4341404]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 4340328 4342002 ZNF143 GTRD no Epithelial (MCF-7) 21686418
chr16 4340795 4341627 ZNF143 GTRD no Epithelial (MCF-7) 21686430
chr16 4340808 4341968 ZNF143 GTRD no Epithelial (MCF-7) 21686431
chr16 4340967 4341866 TCF7L2 GTRD no Colon (HCT116) 21686432
chr16 4341098 4341694 TCF7L2 GTRD no Colon (HCT116) 21686434
chr16 4341260 4341906 TCF7L2 GTRD no Colon (HCT116) 21686435
chr16 4341403 4341435 LUN1 TRANSFAC yes 9267372
Genes associated with rs539654805[chr16:4341404], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More