EnhancerDB
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  3. rs539664888[chr1:229365175]
Enhancers that have rs539664888[chr1:229365175]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229351665 229369695 enh12764
Liver Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs539664888[chr1:229365175]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229364738 229365268 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390842
chr1 229364755 229365271 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390843
chr1 229364845 229365947 POLR2A UCSC Txn Factor no Conserved 107877985
chr1 229364869 229365199 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390844
chr1 229365165 229365180 TFAP2A JASPAR yes 35977546
chr1 229365166 229365177 TFAP2A JASPAR yes 35977547
Genes associated with rs539664888[chr1:229365175], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More