EnhancerDB
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  3. rs539872827[chr6:30808204]
Enhancers that have rs539872827[chr6:30808204]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 30740965 30818275 enh23149
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539872827[chr6:30808204]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 30808183 30808204 IRF1 JASPAR yes 101057970
chr6 30808187 30808208 IRF1 JASPAR yes 101057973
chr6 30808188 30808209 IRF1 JASPAR yes 101057975
chr6 30808193 30808208 FOXP1 JASPAR yes 101057976
chr6 30808193 30808214 IRF1 JASPAR yes 101057977
chr6 30808194 30808215 IRF1 JASPAR yes 101057978
Genes associated with rs539872827[chr6:30808204], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More