EnhancerDB
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  3. rs539968125[chr1:226862848]
Enhancers that have rs539968125[chr1:226862848]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226838901 226907579 enh973
Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539968125[chr1:226862848]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226862827 226862848 IRF1 JASPAR yes 35831367
chr1 226862828 226862849 IRF1 JASPAR yes 35831369
chr1 226862829 226862850 IRF1 JASPAR yes 35831371
chr1 226862830 226862851 IRF1 JASPAR yes 35831373
chr1 226862831 226862852 IRF1 JASPAR yes 35831375
chr1 226862832 226862853 IRF1 JASPAR yes 35831377
chr1 226862833 226862848 FOXP1 JASPAR yes 35831378
chr1 226862833 226862854 IRF1 JASPAR yes 35831379
chr1 226862834 226862849 FOXP1 JASPAR yes 35831380
chr1 226862834 226862855 IRF1 JASPAR yes 35831381
chr1 226862835 226862850 FOXP1 JASPAR yes 35831382
chr1 226862835 226862856 IRF1 JASPAR yes 35831383
chr1 226862836 226862851 FOXP1 JASPAR yes 35831384
chr1 226862836 226862857 IRF1 JASPAR yes 35831385
chr1 226862837 226862852 FOXP1 JASPAR yes 35831386
chr1 226862837 226862858 IRF1 JASPAR yes 35831387
chr1 226862838 226862853 FOXP1 JASPAR yes 35831388
chr1 226862838 226862859 IRF1 JASPAR yes 35831389
chr1 226862839 226862854 FOXP1 JASPAR yes 35831390
chr1 226862840 226862855 FOXP1 JASPAR yes 35831391
chr1 226862842 226862863 IRF1 JASPAR yes 35831392
chr1 226862846 226862860 SPI1 JASPAR yes 35831393
chr1 226862846 226862861 STAT2 JASPAR yes 35831394
Genes associated with rs539968125[chr1:226862848], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More