EnhancerDB
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  3. rs540179053[chr1:27863618]
Enhancers that have rs540179053[chr1:27863618]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 27859909 27873735 enh11667
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Heart
Transcript factors that have rs540179053[chr1:27863618]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 27861998 27863865 ZNF274 GTRD no Blood (GM12878) 107802586
chr1 27863607 27863628 ZNF263 JASPAR yes 27706437
chr1 27863610 27863631 ZNF263 JASPAR yes 27706439
chr1 27863612 27863633 ZNF263 JASPAR yes 27706440
chr1 27863613 27863634 ZNF263 JASPAR yes 27706441
chr1 27863616 27863631 NR2C2 JASPAR yes 27706442
chr1 27863618 27863627 SP1 TRANSFAC yes 27706443
chr1 27863618 27863628 SP1 JASPAR yes 27706444
Genes associated with rs540179053[chr1:27863618], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More