EnhancerDB
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  3. rs540185439[chr6:47118602]
Enhancers that have rs540185439[chr6:47118602]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 47092105 47126155 enh23288
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540185439[chr6:47118602]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 47118589 47118605 POU4F2 JASPAR yes 102004525
chr6 47118589 47118605 POU4F3 JASPAR yes 102004526
chr6 47118591 47118605 POU4F1 JASPAR yes 102004528
chr6 47118591 47118606 FOXP1 JASPAR yes 102004529
chr6 47118593 47118609 POU4F3 JASPAR yes 102004530
chr6 47118594 47118609 FOXA1 JASPAR yes 102004531
chr6 47118595 47118607 FOXI1 JASPAR yes 102004532
chr6 47118595 47118609 POU4F1 JASPAR yes 102004533
chr6 47118595 47118610 FOXP1 JASPAR yes 102004534
chr6 47118595 47118610 HNF1A JASPAR yes 102004535
chr6 47118596 47118608 FOXC2 JASPAR yes 102004536
chr6 47118596 47118610 ONECUT2 JASPAR yes 102004537
chr6 47118596 47118610 ONECUT3 JASPAR yes 102004538
chr6 47118597 47118608 FOXB1 JASPAR yes 102004539
chr6 47118597 47118608 FOXC1 JASPAR yes 102004540
chr6 47118597 47118608 PROP1 JASPAR yes 102004541
chr6 47118598 47118602 YY1 TRANSFAC yes 102004542
chr6 47118598 47118613 FOXA1 JASPAR yes 102004543
chr6 47118599 47118611 FOXI1 JASPAR yes 102004544
chr6 47118599 47118614 FOXP1 JASPAR yes 102004545
chr6 47118600 47118612 FOXC2 JASPAR yes 102004546
chr6 47118600 47118614 ONECUT2 JASPAR yes 102004547
chr6 47118600 47118614 ONECUT3 JASPAR yes 102004548
chr6 47118601 47118612 FOXB1 JASPAR yes 102004549
chr6 47118601 47118612 FOXC1 JASPAR yes 102004550
chr6 47118602 47118606 YY1 TRANSFAC yes 102004551
Genes associated with rs540185439[chr6:47118602], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More