EnhancerDB
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  3. rs540196840[chr1:225800080]
Enhancers that have rs540196840[chr1:225800080]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225783583 225807972 enh43160
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Bone (Osteoblast) Lung Stomach Muscle (A673) Colon (HCT116) Uterus Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs540196840[chr1:225800080]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225800062 225800080 SRF JASPAR yes 35755723
chr1 225800071 225800083 POU2F1 JASPAR yes 35755724
chr1 225800072 225800085 POU2F2 JASPAR yes 35755725
Genes associated with rs540196840[chr1:225800080], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More