EnhancerDB
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  3. rs540199223[chr18:55926007]
Enhancers that have rs540199223[chr18:55926007]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 55922865 55949275 enh17739
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Lung Stomach Muscle (A673) Placenta Thyroid Uterus Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Heart
Transcript factors that have rs540199223[chr18:55926007]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 55925995 55926010 FOXP1 JASPAR yes 110932920
chr18 55925995 55926016 IRF1 JASPAR yes 110932921
chr18 55925999 55926013 STAT1 JASPAR yes 110932923
chr18 55925999 55926014 STAT2 JASPAR yes 110932924
chr18 55926000 55926012 IRF1 JASPAR yes 110932925
chr18 55926001 55926022 IRF1 JASPAR yes 110932926
chr18 55926003 55926018 IRF9 JASPAR yes 110932927
chr18 55926004 55926018 IRF7 JASPAR yes 110932928
chr18 55926005 55926023 SRF JASPAR yes 110932929
chr18 55926006 55926018 IRF1 JASPAR yes 110932930
Genes associated with rs540199223[chr18:55926007], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More