EnhancerDB
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  3. rs540203523[chr2:187406556]
Enhancers that have rs540203523[chr2:187406556]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 187403805 187413855 enh19063
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Colon (HCT116) Uterus Thyroid Pancreas (Panc1) Lung (PC-9) Muscle (Myoblast) Spleen Neural Stem Cells (H9) Stomach
Transcript factors that have rs540203523[chr2:187406556]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 187406535 187406556 IRF1 JASPAR yes 79475086
chr2 187406537 187406558 IRF1 JASPAR yes 79475089
chr2 187406541 187406562 IRF1 JASPAR yes 79475090
chr2 187406542 187406557 FOXP1 JASPAR yes 79475091
chr2 187406546 187406561 FOXP1 JASPAR yes 79475092
chr2 187406547 187406567 RREB1 JASPAR yes 79475093
chr2 187406553 187406568 RUNX2 JASPAR yes 79475094
chr2 187406555 187406575 RREB1 JASPAR yes 79475095
Genes associated with rs540203523[chr2:187406556], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More