EnhancerDB
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  3. rs540269754[chr12:116958769]
Enhancers that have rs540269754[chr12:116958769]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 116953469 116985255 enh30011
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540269754[chr12:116958769]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 116958137 116958877 ZNF143 GTRD no Epithelial (MCF-7) 21577178
chr12 116958137 116958877 ZNF143 GTRD no Epithelial (MCF-7) 108061731
chr12 116958182 116959091 ZNF143 GTRD no Epithelial (MCF-7) 21577179
chr12 116958182 116959091 ZNF143 GTRD no Epithelial (MCF-7) 108061732
chr12 116958206 116959013 ZNF143 GTRD no Epithelial (MCF-7) 21577180
chr12 116958206 116959013 ZNF143 GTRD no Epithelial (MCF-7) 108061733
chr12 116958335 116958856 ZNF143 GTRD no Epithelial (MCF-7) 21577181
chr12 116958335 116958856 ZNF143 GTRD no Epithelial (MCF-7) 108061734
chr12 116958357 116958909 ZBTB33 GTRD no Lung (A549) 108061735
chr12 116958436 116958831 ZNF143 GTRD no Epithelial (MCF-7) 21577182
chr12 116958436 116958831 ZNF143 GTRD no Epithelial (MCF-7) 108061736
chr12 116958445 116958886 ZBTB33 GTRD no Lung (A549) 108061737
chr12 116958504 116958862 ZNF143 GTRD no Epithelial (MCF-7) 21577183
chr12 116958504 116958862 ZNF143 GTRD no Epithelial (MCF-7) 108061738
chr12 116958584 116958860 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108061739
chr12 116958732 116959108 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 21577184
chr12 116958732 116959108 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108061740
chr12 116958766 116958781 RUNX2 JASPAR yes 124005781
chr12 116958767 116958777 RUNX3 JASPAR yes 124005782
Genes associated with rs540269754[chr12:116958769], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More