EnhancerDB
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  3. rs540316878[chr16:11388230]
Enhancers that have rs540316878[chr16:11388230]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 11382725 11409295 enh3884
Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Cervix (HeLa-S3) Large Intestine Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs540316878[chr16:11388230]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 11388218 11388233 FOXP1 JASPAR yes 9502177
chr16 11388220 11388235 FOXP1 JASPAR yes 9502178
chr16 11388221 11388242 IRF1 JASPAR yes 9502179
chr16 11388222 11388237 FOXP1 JASPAR yes 9502180
chr16 11388222 11388243 IRF1 JASPAR yes 9502181
chr16 11388226 11388247 IRF1 JASPAR yes 9502182
chr16 11388227 11388242 FOXP1 JASPAR yes 9502183
chr16 11388227 11388248 IRF1 JASPAR yes 9502184
chr16 11388228 11388249 IRF1 JASPAR yes 9502185
Genes associated with rs540316878[chr16:11388230], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More