EnhancerDB
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  3. rs540374928[chr1:157988669]
Enhancers that have rs540374928[chr1:157988669]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 157969514 158001213 enh12308
Brain (SK-N-MC) Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Stomach Skin (Keratinocyte) Ovary Bone (Osteoblast) Lung (A549) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540374928[chr1:157988669]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 157988662 157988678 SOX4 JASPAR yes 32458244
chr1 157988663 157988678 SOX21 JASPAR yes 32458245
chr1 157988665 157988676 PROP1 JASPAR yes 32458249
chr1 157988667 157988677 HOXA13 JASPAR yes 32458250
chr1 157988667 157988677 HOXD13 JASPAR yes 32458251
chr1 157988667 157988678 HOXA10 JASPAR yes 32458252
chr1 157988667 157988682 MEF2A JASPAR yes 32458253
chr1 157988668 157988677 CDX1 JASPAR yes 32458254
chr1 157988668 157988679 CDX2 JASPAR yes 32458255
chr1 157988668 157988683 MEF2C JASPAR yes 32458256
chr1 157988669 157988681 MEF2A JASPAR yes 32458257
chr1 157988669 157988681 MEF2B JASPAR yes 32458258
chr1 157988669 157988681 MEF2D JASPAR yes 32458259
Genes associated with rs540374928[chr1:157988669], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More