EnhancerDB
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  3. rs540375537[chr17:25674729]
Enhancers that have rs540375537[chr17:25674729]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 25656275 25685575 enh4305
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540375537[chr17:25674729]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 25674716 25674730 ONECUT2 JASPAR yes 53622630
chr17 25674716 25674730 ONECUT3 JASPAR yes 53622631
chr17 25674720 25674735 FOXP1 JASPAR yes 53622632
chr17 25674722 25674733 FOXC1 JASPAR yes 53622633
chr17 25674722 25674734 FOXC2 JASPAR yes 53622634
chr17 25674724 25674738 FOXF2 JASPAR yes 53622635
chr17 25674724 25674738 ONECUT3 JASPAR yes 53622636
chr17 25674724 25674739 FOXP1 JASPAR yes 53622637
chr17 25674724 25674739 HNF1A JASPAR yes 53622638
chr17 25674725 25674739 POU4F1 JASPAR yes 53622639
chr17 25674725 25674740 FOXA1 JASPAR yes 53622640
chr17 25674725 25674741 POU4F2 JASPAR yes 53622641
chr17 25674725 25674741 POU4F3 JASPAR yes 53622642
chr17 25674726 25674737 FOXB1 JASPAR yes 53622643
chr17 25674726 25674737 FOXC1 JASPAR yes 53622644
chr17 25674726 25674737 PROP1 JASPAR yes 53622645
chr17 25674726 25674738 FOXC2 JASPAR yes 53622646
chr17 25674727 25674739 FOXI1 JASPAR yes 53622647
chr17 25674728 25674742 ONECUT2 JASPAR yes 53622648
chr17 25674728 25674742 ONECUT3 JASPAR yes 53622649
chr17 25674728 25674743 FOXP1 JASPAR yes 53622650
chr17 25674728 25674743 HNF1A JASPAR yes 53622651
chr17 25674729 25674743 POU4F1 JASPAR yes 53622652
chr17 25674729 25674744 FOXA1 JASPAR yes 53622653
chr17 25674729 25674745 POU4F2 JASPAR yes 53622654
chr17 25674729 25674745 POU4F3 JASPAR yes 53622655
Genes associated with rs540375537[chr17:25674729], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More