EnhancerDB
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  3. rs540384925[chr12:65997313]
Enhancers that have rs540384925[chr12:65997313]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 65985125 66011195 enh47591
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Stomach Muscle (A673) Colon (HCT116) Uterus Lung (PC-9) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs540384925[chr12:65997313]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 65996923 66000321 ZBTB33 GTRD no Brain (SK-N-SH) 108042117
chr12 65997187 65997691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21553138
chr12 65997187 65997691 TCF7L2 UCSC Txn Factor no Conserved 108042118
chr12 65997187 65997691 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108042119
chr12 65997201 65997777 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108042120
chr12 65997204 65997811 ZBTB33 GTRD no Brain (SK-N-SH) 108042121
chr12 65997251 65997750 TCF7L2 GTRD no Colon (HCT116) 21553139
chr12 65997251 65997750 TCF7L2 GTRD no Colon (HCT116) 108042122
chr12 65997284 65997567 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 108042123
chr12 65997287 65997643 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21553140
chr12 65997287 65997643 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108042124
chr12 65997308 65997320 NHLH1 JASPAR yes 121474296
chr12 65997308 65997538 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21553141
chr12 65997308 65997538 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108042125
chr12 65997309 65997318 SNAI2 JASPAR yes 121474297
chr12 65997309 65997319 ID4 JASPAR yes 121474298
chr12 65997309 65997319 NHLH1 JASPAR yes 121474299
chr12 65997309 65997319 TCF3 JASPAR yes 121474300
chr12 65997309 65997319 TCF4 JASPAR yes 121474301
Genes associated with rs540384925[chr12:65997313], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More