EnhancerDB
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  3. rs540406022[chr12:125223658]
Enhancers that have rs540406022[chr12:125223658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540406022[chr12:125223658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125223295 125223891 TCF7L2 ENCODE Uniform TFBS no Pancreas (Panc1) 21582509
chr12 125223316 125223940 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582511
chr12 125223368 125223678 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21582512
chr12 125223410 125223686 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582514
chr12 125223477 125223798 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21582515
chr12 125223500 125223790 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582517
chr12 125223529 125223931 ZNF274 GTRD no Bone Marrow (K562) 21582518
chr12 125223546 125223676 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21582519
chr12 125223557 125223939 ZNF274 GTRD no Cervix (HeLa-S3) 21582520
chr12 125223579 125223854 ZNF274 GTRD no Liver (HepG2) 21582521
Genes associated with rs540406022[chr12:125223658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More