EnhancerDB
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  3. rs540414419[chr12:125230083]
Enhancers that have rs540414419[chr12:125230083]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 125176905 125261395 enh2676
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Spleen Muscle (Myotube) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540414419[chr12:125230083]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 125229736 125230136 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21582632
chr12 125229954 125230694 ZNF274 GTRD no Bone Marrow (K562) 21582633
chr12 125229954 125230694 ZNF274 GTRD no Bone Marrow (K562) 108069764
chr12 125230004 125230158 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21582634
Genes associated with rs540414419[chr12:125230083], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More