EnhancerDB
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  3. rs540420116[chr1:41873710]
Enhancers that have rs540420116[chr1:41873710]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 41849805 41888800 enh11788
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540420116[chr1:41873710]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 41873697 41873717 RREB1 JASPAR yes 28386410
chr1 41873700 41873720 RREB1 JASPAR yes 28386411
chr1 41873701 41873721 RREB1 JASPAR yes 28386412
chr1 41873702 41873716 GLIS2 JASPAR yes 28386413
chr1 41873702 41873716 GLIS3 JASPAR yes 28386414
chr1 41873702 41873716 ZIC1 JASPAR yes 28386415
chr1 41873705 41873710 SP1 TRANSFAC yes 28386416
chr1 41873706 41873716 ZNF740 JASPAR yes 28386417
chr1 41873708 41873718 SP1 JASPAR yes 28386418
chr1 41873709 41873719 SP1 JASPAR yes 28386419
Genes associated with rs540420116[chr1:41873710], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More