EnhancerDB
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  3. rs540605961[chr12:109066433]
Enhancers that have rs540605961[chr12:109066433]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109055765 109067015 enh2584
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540605961[chr12:109066433]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109066416 109066436 RREB1 JASPAR yes 123611639
chr12 109066416 109066437 IRF1 JASPAR yes 123611640
chr12 109066420 109066435 IRF9 JASPAR yes 123611641
chr12 109066421 109066433 IRF1 JASPAR yes 123611642
chr12 109066421 109066441 RREB1 JASPAR yes 123611643
chr12 109066422 109066443 IRF1 JASPAR yes 123611644
chr12 109066423 109066438 FOXP1 JASPAR yes 123611646
chr12 109066424 109066439 STAT2 JASPAR yes 123611647
chr12 109066426 109066438 IRF1 JASPAR yes 123611648
chr12 109066428 109066434 TCF4 TRANSFAC yes 123611649
chr12 109066428 109066443 FOXP1 JASPAR yes 123611650
chr12 109066429 109066440 FOXP2 JASPAR yes 123611651
chr12 109066429 109066441 FOXC2 JASPAR yes 123611652
chr12 109066429 109066444 STAT2 JASPAR yes 123611653
chr12 109066430 109066445 FOXP1 JASPAR yes 123611654
Genes associated with rs540605961[chr12:109066433], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More