EnhancerDB
  1. Home
  2. SNP
  3. rs540656199[chr17:43251397]
Enhancers that have rs540656199[chr17:43251397]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 43246305 43256255 enh4426
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Lung Muscle (A673)
Transcript factors that have rs540656199[chr17:43251397]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 43251324 43251901 TCF7L2 GTRD no Colon (HCT116) 21763237
chr17 43251347 43251881 TCF7L2 GTRD no Colon (HCT116) 21763238
chr17 43251356 43251869 TCF7L2 GTRD no Colon (HCT116) 21763239
chr17 43251363 43251863 TCF7L2 GTRD no Colon (HCT116) 21763240
chr17 43251388 43251400 ZBTB7A JASPAR yes 54433156
chr17 43251393 43251398 SP1 TRANSFAC yes 54433158
Genes associated with rs540656199[chr17:43251397], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More