EnhancerDB
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  3. rs540666255[chr6:35005277]
Enhancers that have rs540666255[chr6:35005277]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 34986593 35008101 enh23172
Astrocyte Adrenal Embryonic Stem Cell Line (H1-hESC) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Lung (A549) Thyroid Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Breast Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540666255[chr6:35005277]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 35005259 35005280 IRF1 JASPAR yes 101258128
chr6 35005263 35005277 STAT1 JASPAR yes 101258129
chr6 35005263 35005278 STAT2 JASPAR yes 101258130
chr6 35005268 35005282 ONECUT3 JASPAR yes 101258132
chr6 35005272 35005283 CDX2 JASPAR yes 101258133
chr6 35005274 35005278 H1TF2 TRANSFAC yes 101258134
chr6 35005274 35005278 NFE TRANSFAC yes 101258135
chr6 35005274 35005278 SRF TRANSFAC yes 101258136
chr6 35005274 35005284 HOXA13 JASPAR yes 101258137
Genes associated with rs540666255[chr6:35005277], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More