EnhancerDB
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  3. rs540728642[chr16:85283200]
Enhancers that have rs540728642[chr16:85283200]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540728642[chr16:85283200]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85281873 85283764 ZNF143 GTRD no Epithelial (MCF-7) 21722024
chr16 85282021 85283855 ZNF143 GTRD no Epithelial (MCF-7) 21722028
chr16 85282153 85283269 ZNF143 GTRD no Epithelial (MCF-7) 21722032
chr16 85282744 85283852 ZNF274 GTRD no Bone Marrow (K562) 21722038
chr16 85282806 85283570 TCF7L2 GTRD no Colon (HCT116) 21722039
chr16 85282811 85283694 TCF7L2 GTRD no Colon (HCT116) 21722040
chr16 85282811 85283753 ZNF143 GTRD no Epithelial (MCF-7) 21722041
chr16 85282819 85283580 ZNF143 GTRD no Epithelial (MCF-7) 21722042
chr16 85282822 85285082 TCF7L2 GTRD no Colon (HCT116) 21722043
chr16 85282823 85284771 TCF7L2 GTRD no Colon (HCT116) 21722044
chr16 85282828 85283759 ZNF143 GTRD no Epithelial (MCF-7) 21722045
chr16 85282840 85283726 ZNF143 GTRD no Epithelial (MCF-7) 21722046
chr16 85282859 85283734 ZNF143 GTRD no Epithelial (MCF-7) 21722048
chr16 85282926 85283376 ZNF274 GTRD no Bone Marrow (K562) 21722049
chr16 85282961 85283249 ZNF274 GTRD no Liver (HepG2) 21722050
chr16 85283190 85283201 CEBPB JASPAR yes 12038611
Genes associated with rs540728642[chr16:85283200], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More