EnhancerDB
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  3. rs540742437[chr16:4339998]
Enhancers that have rs540742437[chr16:4339998]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 4330820 4352135 enh16514
Astrocyte Colon (HCT116) Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540742437[chr16:4339998]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 4335970 4340905 TCF7L2 GTRD no Colon (HCT116) 21686304
chr16 4339547 4340798 ZNF143 GTRD no Epithelial (MCF-7) 21686374
chr16 4339548 4340449 ZNF143 GTRD no Epithelial (MCF-7) 21686375
chr16 4339550 4340186 TCF7L2 GTRD no Colon (HCT116) 21686376
chr16 4339565 4340260 ZNF143 GTRD no Epithelial (MCF-7) 21686377
chr16 4339572 4340204 TCF7L2 GTRD no Colon (HCT116) 21686378
chr16 4339573 4340621 ZNF143 GTRD no Epithelial (MCF-7) 21686379
chr16 4339674 4340351 TCF7L2 GTRD no Colon (HCT116) 21686380
chr16 4339784 4340463 ZNF143 GTRD no Epithelial (MCF-7) 21686381
chr16 4339873 4340298 ZBTB33 GTRD no Brain (SK-N-SH) 21686382
chr16 4339931 4340829 TCF7L2 GTRD no Colon (HCT116) 21686383
chr16 4339981 4340002 IRF1 JASPAR yes 9267112
chr16 4339982 4340003 IRF1 JASPAR yes 9267114
chr16 4339982 4341093 ZNF143 GTRD no Epithelial (MCF-7) 21686384
chr16 4339983 4339998 FOXP1 JASPAR yes 9267115
chr16 4339983 4340004 IRF1 JASPAR yes 9267116
chr16 4339984 4339999 FOXP1 JASPAR yes 9267117
chr16 4339984 4340005 IRF1 JASPAR yes 9267118
chr16 4339985 4340000 FOXP1 JASPAR yes 9267119
chr16 4339985 4340006 IRF1 JASPAR yes 9267120
chr16 4339986 4340001 FOXP1 JASPAR yes 9267121
chr16 4339986 4340007 IRF1 JASPAR yes 9267122
chr16 4339987 4340002 FOXP1 JASPAR yes 9267123
chr16 4339987 4340008 IRF1 JASPAR yes 9267124
chr16 4339988 4340003 FOXP1 JASPAR yes 9267125
chr16 4339988 4340009 IRF1 JASPAR yes 9267126
chr16 4339989 4340004 FOXP1 JASPAR yes 9267127
chr16 4339989 4340010 IRF1 JASPAR yes 9267128
chr16 4339990 4340005 FOXP1 JASPAR yes 9267129
chr16 4339990 4340011 IRF1 JASPAR yes 9267130
chr16 4339991 4340006 FOXP1 JASPAR yes 9267131
chr16 4339991 4340012 IRF1 JASPAR yes 9267132
chr16 4339992 4340007 FOXP1 JASPAR yes 9267133
chr16 4339993 4340008 FOXP1 JASPAR yes 9267134
chr16 4339993 4340014 IRF1 JASPAR yes 9267135
chr16 4339994 4340009 FOXP1 JASPAR yes 9267136
chr16 4339995 4340010 FOXP1 JASPAR yes 9267137
Genes associated with rs540742437[chr16:4339998], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More