EnhancerDB
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Enhancers that have rs540866473[chr12:109088654]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 109075725 109093399 enh14973
Bone Marrow (K562) Astrocyte Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Blood (OCI-LY7) Thyroid Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr12 109088465 109088864 vista14831
VISTA
Transcript factors that have rs540866473[chr12:109088654]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109088490 109088800 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21571470
chr12 109088490 109088800 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108057227
chr12 109088508 109088878 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21571471
chr12 109088508 109088878 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108057228
chr12 109088512 109088802 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21571472
chr12 109088512 109088802 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108057229
chr12 109088537 109088792 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21571473
chr12 109088537 109088792 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108057230
chr12 109088559 109088955 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21571474
chr12 109088559 109088955 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108057231
chr12 109088570 109089120 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21571475
chr12 109088570 109089120 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108057232
chr12 109088608 109089064 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21571476
chr12 109088608 109089064 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108057233
chr12 109088617 109089133 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21571477
chr12 109088617 109089133 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108057234
chr12 109088646 109088662 ZNF143 JASPAR yes 82473819
chr12 109088646 109088662 ZNF143 JASPAR yes 123613891
chr12 109088649 109088999 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21571478
chr12 109088649 109088999 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108057235
Genes associated with rs540866473[chr12:109088654], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More