EnhancerDB
  1. Home
  2. SNP
  3. rs540908376[chr1:52089580]
Enhancers that have rs540908376[chr1:52089580]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52082245 52099655 enh11847
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Large Intestine Esophagus Astrocyte Stomach Placenta Colon (HCT116) Uterus Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Heart
Transcript factors that have rs540908376[chr1:52089580]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52089572 52089582 HOXB13 JASPAR yes 28855450
chr1 52089572 52089582 HOXD13 JASPAR yes 28855451
chr1 52089572 52089583 HOXA10 JASPAR yes 28855452
Genes associated with rs540908376[chr1:52089580], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More