EnhancerDB
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  3. rs540923602[chr1:225804804]
Enhancers that have rs540923602[chr1:225804804]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 225783583 225807972 enh43160
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Bone (Osteoblast) Lung Stomach Muscle (A673) Colon (HCT116) Uterus Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs540923602[chr1:225804804]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 225804797 225804807 ALX3 JASPAR yes 35756468
chr1 225804797 225804807 GSX2 JASPAR yes 35756469
chr1 225804797 225804807 MIXL1 JASPAR yes 35756470
chr1 225804798 225804806 ISX JASPAR yes 35756471
chr1 225804798 225804806 LHX9 JASPAR yes 35756472
chr1 225804798 225804806 LMX1B JASPAR yes 35756473
chr1 225804798 225804806 PRRX1 JASPAR yes 35756474
chr1 225804798 225804806 RAX2 JASPAR yes 35756475
chr1 225804798 225804806 SHOX JASPAR yes 35756476
chr1 225804798 225804806 UNCX JASPAR yes 35756477
chr1 225804799 225804814 FOXP1 JASPAR yes 35756478
chr1 225804801 225804816 FOXP1 JASPAR yes 35756479
chr1 225804802 225804817 FOXP1 JASPAR yes 35756480
chr1 225804803 225804809 TBP TRANSFAC yes 35756481
chr1 225804803 225804818 FOXP1 JASPAR yes 35756482
Genes associated with rs540923602[chr1:225804804], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More