EnhancerDB
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  3. rs541293560[chr12:66282259]
Enhancers that have rs541293560[chr12:66282259]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 66278327 66298619 enh29659
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Brain (SK-N-MC) Lung (PC-9) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Breast Uterus Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs541293560[chr12:66282259]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 66282238 66282259 IRF1 JASPAR yes 121502172
chr12 66282239 66282260 IRF1 JASPAR yes 121502173
chr12 66282242 66282263 ZNF263 JASPAR yes 121502174
chr12 66282244 66282259 FOXP1 JASPAR yes 121502175
chr12 66282244 66282265 IRF1 JASPAR yes 121502176
chr12 66282248 66282263 STAT2 JASPAR yes 121502177
chr12 66282248 66282269 IRF1 JASPAR yes 121502178
chr12 66282249 66282264 FOXP1 JASPAR yes 121502179
chr12 66282252 66282266 STAT1 JASPAR yes 121502180
chr12 66282252 66282267 STAT2 JASPAR yes 121502181
Genes associated with rs541293560[chr12:66282259], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More