EnhancerDB
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  3. rs541730060[chr16:85261872]
Enhancers that have rs541730060[chr16:85261872]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85219145 85290912 enh16864
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs541730060[chr16:85261872]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85260361 85262190 ZNF143 GTRD no Epithelial (MCF-7) 21721585
chr16 85260510 85262136 ZNF143 GTRD no Epithelial (MCF-7) 21721587
chr16 85260719 85262097 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21721598
chr16 85261133 85261947 ZNF274 GTRD no Liver (HepG2) 21721642
chr16 85261386 85263193 ZNF274 GTRD no Bone Marrow (K562) 21721652
chr16 85261395 85263673 ZNF274 GTRD no Bone Marrow (K562) 21721653
chr16 85261513 85263489 ZNF274 GTRD no Bone Marrow (K562) 21721654
chr16 85261536 85262206 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21721655
chr16 85261556 85261932 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21721656
chr16 85261572 85263290 ZNF274 GTRD no Bone Marrow (K562) 21721657
chr16 85261603 85262293 ZNF274 GTRD no Bone Marrow (K562) 21721659
chr16 85261610 85261980 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721660
chr16 85261630 85262043 ZNF274 GTRD no Blood (GM12878) 21721661
chr16 85261723 85263573 ZNF274 GTRD no Bone Marrow (K562) 21721662
chr16 85261730 85262721 ZNF274 GTRD no Bone Marrow (K562) 21721663
chr16 85261758 85261988 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21721664
chr16 85261769 85262072 ZNF274 GTRD no Blood (GM12878) 21721665
chr16 85261779 85262235 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21721666
chr16 85261800 85262188 ZNF274 GTRD no Bone Marrow (K562) 21721667
chr16 85261814 85263256 ZNF274 GTRD no Bone Marrow (K562) 21721668
chr16 85261835 85262667 ZNF274 GTRD no Bone Marrow (K562) 21721669
chr16 85261866 85261886 RREB1 JASPAR yes 12035526
chr16 85261872 85261887 RUNX2 JASPAR yes 12035527
Genes associated with rs541730060[chr16:85261872], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More