EnhancerDB
  1. Home
  2. SNP
  3. rs541742665[chr6:34624621]
Enhancers that have rs541742665[chr6:34624621]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 34618105 34636675 enh9069
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Blood (OCI-LY7) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Placenta Lung (PC-9) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
chr6 34624445 34624747 vista51682
VISTA
Transcript factors that have rs541742665[chr6:34624621]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 34623905 34625770 POLR2A UCSC Txn Factor no Conserved 108539803
chr6 34623905 34625770 POLR2A UCSC Txn Factor no Conserved 108539804
chr6 34624026 34624861 NFIC UCSC Txn Factor no Conserved 108539805
chr6 34624073 34624787 RUNX3 UCSC Txn Factor no Conserved 108539806
chr6 34624084 34624774 ATF2 UCSC Txn Factor no Conserved 108539807
chr6 34624093 34624797 FOXM1 UCSC Txn Factor no Conserved 108539808
chr6 34624101 34624751 EP300 UCSC Txn Factor no Conserved 108539809
chr6 34624382 34624684 TCF3 UCSC Txn Factor no Conserved 108539810
chr6 34624390 34624758 TCF12 UCSC Txn Factor no Conserved 108539811
chr6 34624459 34624701 BATF UCSC Txn Factor no Conserved 108539812
chr6 34624617 34624621 H1TF2 TRANSFAC yes 70351217
chr6 34624617 34624621 NFE TRANSFAC yes 70351218
chr6 34624617 34624621 SRF TRANSFAC yes 70351219
chr6 34624617 34624621 H1TF2 TRANSFAC yes 101229041
chr6 34624617 34624621 NFE TRANSFAC yes 101229042
chr6 34624617 34624621 SRF TRANSFAC yes 101229043
Genes associated with rs541742665[chr6:34624621], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More