EnhancerDB
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  3. rs541798601[chr10:95194200]
Enhancers that have rs541798601[chr10:95194200]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 95190385 95209175 enh13411
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Kidney Skin (Keratinocyte) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs541798601[chr10:95194200]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 95193624 95194446 ZNF143 GTRD no Epithelial (MCF-7) 21450816
chr10 95193624 95194446 ZNF143 GTRD no Epithelial (MCF-7) 107931683
chr10 95193666 95194404 ZNF143 GTRD no Epithelial (MCF-7) 21450817
chr10 95193666 95194404 ZNF143 GTRD no Epithelial (MCF-7) 107931684
chr10 95193668 95194422 GATA3 GTRD no Thymus 21450818
chr10 95193668 95194422 GATA3 GTRD no Thymus 107931685
chr10 95193692 95194240 ZNF143 GTRD no Epithelial (MCF-7) 21450819
chr10 95193692 95194240 ZNF143 GTRD no Epithelial (MCF-7) 107931686
chr10 95193757 95194398 ZNF143 GTRD no Epithelial (MCF-7) 21450820
chr10 95193757 95194398 ZNF143 GTRD no Epithelial (MCF-7) 107931687
chr10 95194185 95194200 FOXP1 JASPAR yes 129210584
chr10 95194186 95194201 FOXP1 JASPAR yes 129210585
chr10 95194187 95194202 FOXP1 JASPAR yes 129210586
chr10 95194187 95194208 IRF1 JASPAR yes 129210587
chr10 95194188 95194203 FOXP1 JASPAR yes 129210588
chr10 95194188 95194209 IRF1 JASPAR yes 129210589
chr10 95194189 95194204 FOXP1 JASPAR yes 129210590
chr10 95194189 95194210 IRF1 JASPAR yes 129210591
chr10 95194190 95194205 FOXP1 JASPAR yes 129210592
chr10 95194192 95194207 FOXP1 JASPAR yes 129210593
chr10 95194193 95194208 STAT2 JASPAR yes 129210594
chr10 95194194 95194209 FOXP1 JASPAR yes 129210595
chr10 95194194 95194215 IRF1 JASPAR yes 129210596
chr10 95194195 95194216 IRF1 JASPAR yes 129210597
chr10 95194196 95194208 FOXC2 JASPAR yes 129210598
chr10 95194197 95194208 FOXP2 JASPAR yes 129210599
chr10 95194200 95194221 IRF1 JASPAR yes 129210600
Genes associated with rs541798601[chr10:95194200], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More